Малые некодирующие 6S-1 и 6S-2 РНК из Bacillussubtilis - сравнительный анализ свойств и функций (1105586), страница 33
Текст из файла (страница 33)
2002. V. 207. P. 29-33.14854.Voss B., Hölscher M., Baumgarth B., Kalbfleisch A., Kaya C., Hess W.R., Becker A.,Evguenieva-Hackenberg E. Expression of small RNAs in Rhizobiales and protection of asmall RNA and its degradation products by Hfq in Sinorhizobium meliloti. // BiochemBiophys Res Commun. 2009. V. 390. P.
331-336.55.Sharma C.M., Hoffmann S., Darfeuille F., Reignier J., Findeiss S., Sittka A., Chabas S.,Reiche K., Hackermüller J., Reinhardt R., Stadler P.F., Vogel J. The primarytranscriptome of the major human pathogen Helicobacter pylori. // Nature. 2010. V. 464.P. 250-255.56.Mandin P., Repoila F., Vergassola M., Geissmann T., Cossart P. Identification of newnoncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. // NucleicAcids Res. 2007. V. 35. P.
962-974.57.Weissenmayer B.A., Prendergast J.G., Lohan A.J., Loftus B.J. Sequencing illustrates thetranscriptional response of Legionella pneumophila during infection and identifiesseventy novel small non-coding RNAs. // PLoS One. 2011. V. 6. e17570.58.Faucher S.P., Friedlander G., Livny J., Margalit H., Shuman H.A. Legionellapneumophila 6S RNA optimizes intracellular multiplication. // Proc Natl Acad Sci USA.2010. V. 107.
P. 7533-7538.59.Rediger A., Geissen R., Steuten B., Heilmann B., Wagner R., Axmann I.M. 6S RNA an old issue became blue-green. // Microbiology. 2012. V. 158. P. 2480-2491.60.Axmann I.M., Holtzendorff J., Voss B., Kensche P., Hess W.R. Two distinct types of6S RNA in Prochlorococcus.
// Gene. 2007. V. 406. P. 69-78.61.Ortega A.D., Gonzalo-Asensio J., García-del Portillo F. Dynamics of Salmonella smallRNA expression in non-growing bacteria located inside eukaryotic cells. // RNA Biology.2012. V. 9. P.469-488.62.Bohn C., Rigoulay C., Chabelskaya S., Sharma C.M., Marchais A., Skorski P., BorezéeDurant E., Barbet R., Jacquet E., Jacq A., Gautheret D., Felden B., Vogel J., Bouloc P.Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulatorof central metabolism. // Nucleic Acids Res. 2010.
V. 38. P. 6620-6636.63.Watanabe T., Sugiura M., Sugita M. A novel small stable RNA, 6Sa RNA, from thecyanobacterium Synechococcus sp. strain PCC6301. // FEBS Lett. 1997. V. 416. P. 302306.64.Cavanagh A.T., Sperger J.M., Wassarman K.M. Regulation of 6S RNA by pRNAsynthesis is required for efficient recovery from stationary phase in E. coli and B. subtilis.// Nucleic Acids Res.
2012. V. 40. P. 2234-2246.65.Kugel J.F., Goodrich J.A. Beating the heat: a translation factor and an RNA mobilize theheat shock transcription factor HSF1. // Mol Cell. 2006. V. 22. P. 153-154.66.Thomas M., Chédin S., Carles C., Riva M., Famulok M., Sentenac A. Selective targetingand inhibition of yeast RNA polymerase II by RNA aptamers.
// J Biol Chem. 1997.V. 272. P. 27980-27986.67.Kettenberger H., Eisenführ A., Brueckner F., Theis M., Famulok M., Cramer P. Structureof an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation bynoncoding RNAs. // Nat Struct Mol Biol. 2006. V. 13. P. 44-48.68.Lehmann E., Brueckner F., Cramer P. Molecular basis of RNA-dependent RNApolymerase II activity. // Nature. 2007. V. 450. P.
445-449.69.Kramerov D.A., Vassetzky N.S. Short retroposons in eukaryotic genomes. // Int Rev149Cytol. 2005. V. 247. P. 165-221.70.Ponicsan S.L., Kugel J.F., Goodrich J.A. Genomic gems: SINE RNAs regulate mRNAproduction. // Curr Opin Genet Dev. 2010. V. 20. P. 149-155.71.Ichiyanagi K., Li Y., Watanabe T., Ichiyanagi T., Fukuda K., Kitayama J., Yamamoto Y.,Kuramochi-Miyagawa S., Nakano T., Yabuta Y., Seki Y., Saitou M., Sasaki H. Locusand domain-dependent control of DNA methylation at mouse B1 retrotransposons duringmale germ cell development. // Genome Res. 2011.
V. 21. P. 2058-2066.72.Vassetzky N.S., Ten O.A., Kramerov D.A. B1 and related SINEs in mammaliangenomes. // Gene. 2003. V. 319. P. 149-160.73.Maraia R.J., Driscoll C.T., Bilyeu T., Hsu K., Darlington G.J. Multiple dispersed lociproduce small cytoplasmic Alu RNA. // Mol Cell Biol. 1993. V. 13. P. 4233-4241.74.Mariner P.D., Walters R.D., Espinoza C.A., Drullinger L.F., Wagner S.D., Kugel J.F.,Goodrich J.A. Human Alu RNA is a modular transacting repressor of mRNAtranscription during heat shock.
// Mol Cell. 2008. V. 29. P. 499-509.75.Allen T.A., Von Kaenel S., Goodrich J.A., Kugel J.F. The SINE-encoded mouse B2 RNArepresses mRNA transcription in response to heat shock. // Nat Struct Mol Biol. 2004.V. 11. P. 816-821.76.Espinoza C.A., Allen T.A., Hieb A.R., Kugel J.F., Goodrich J.A.
B2 RNA binds directlyto RNA polymerase II to repress transcript synthesis. // Nat Struct Mol Biol. 2004. V. 11.P. 822-829.77.Wagner S.D., Kugel J.F., Goodrich J.A. TFIIF facilitates dissociation of RNApolymerase II from noncoding RNAs that lack a repression domain. // Mol Cell Biol.2010. V. 30. P. 91-97.78.Fornace A.J.Jr., Alamo I.Jr., Hollander M.C., Lamoreaux E. Induction of heat shockprotein transcripts and B2 transcripts by various stresses in Chinese hamster cells. // ExpCell Res.
1989. V. 182. P. 61-74.79.Espinoza C.A., Goodrich J.A., Kugel J.F. Characterization of the structure, function, andmechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription. // RNA.2007. V. 13. P. 583-596.80.Bladon T.S., Frégeau C.J., McBurney M.W. Synthesis and processing of small B2transcripts in mouse embryonal carcinoma cells. // Mol Cell Biol. 1990. V. 10. P. 40584067.81.Cheung A.C., Cramer P. A movie of RNA polymerase II transcription.
// Cell. 2012. V.149. P. 1431-1437.82.Yakovchuk P., Goodrich J.A., Kugel J.F. B2 RNA represses TFIIH phosphorylation ofRNA polymerase II. // Transcription. 2011. V. 2. P. 45-49.83.Jones J.C., Phatnani H.P., Haystead T.A., MacDonald J.A., Alam S.M., Greenleaf A.L.38C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase IIC-terminal domain repeats. // J Biol Chem.
2004. V. 279. P. 24957-24964.84.Wagner S.D., Yakovchuk P., Gilman B., Ponicsan S.L., Drullinger L.F., Kugel J.F.,Goodrich J.A. RNA polymerase II acts as an RNA-dependent RNA polymerase to extendand destabilize a non-coding RNA. // EMBO J. 2013. V. 32. P. 781-790.85.Modahl L.E., Macnaughton T.B., Zhu N., Johnson D.L., Lai M.M. RNA-Dependentreplication and transcription of hepatitis delta virus RNA involve distinct cellular RNApolymerases. // Mol Cell Biol.
2000. V. 16. P. 6030-6039.15086.Zieve G., Penman S. Small RNA species of the HeLa cell: metabolism and subcellularlocalization. // Cell. 1976. V. 8. P. 19-31.87.Nguyen V.T., Kiss T., Michels A.A., Bensaude O. 7SK snRNA binds to and inhibits theactivity of Cdk9/cyclin T complexes. // Nature.
2001. V. 414. P. 322-325.88.Yang Z., Zhu Q., Luo K., Zhou Q. The 7SK small nuclear RNA inhibits the CDK9/cyclinT1 kinase to control transcription. // Nature. 2001. V. 414. P. 317-322.89.Zhou Q., Yik J.H. The Yin and Yang of P-TEFb regulation: implications for humanimmunodeficiency virus gene expression and global control of cell growth anddifferentiation. // Microbiol Mol Biol Rev. 2006. V.
70. P. 646-659.90.Peterlin B.M., Price D.H. Controlling the elongation phase of transcription withP-TEFb. // Mol Cell. 2006. V. 23. P. 297–305.91.Макарова Ю.А., Крамеров Д.А. Некодирующие РНК. // Биохимия. 2007. Т. 72.С. 1427-1448.92.Wassarman D.A., Steitz J.A. Structural analyses of the 7SK ribonucleoprotein (RNP), themost abundant human small RNP of unknown function. // Mol Cell Biol. 1991. V. 11.P.
3432-3445.93.Gurney T., Eliceiri G.L. Intracellular distribution of low molecular weight RNA species inHeLa cells. // J Cell Biol. 1980. V. 87. P. 398-403.94.Maraia R.J., Bayfield, M.A. The La protein–RNA complex. // Mol Cell. 2006. V. 21.P. 149-152.95.Peterlin B.M., Brogie J.E., Price D.H.7SK snRNA: a noncoding RNA that plays a majorrole in regulating eukaryotic transcription. // Wiley Interdiscip Rev RNA. 2012. V. 3.P. 92-103.96.Gupta S., Busch R.K., Singh R., Reddy R. Characterization of U6 small nuclear RNAcap-specific antibodies.
Identification of γ-monomethyl-GTP cap structure in 7SKandseveral other human small RNAs. // J Biol Chem. 1990. V. 265. P. 19137-19142.97.Kusuhara M., Nagasaki K., Kimura K., Maass N., Manabe T., Ishikawa S., Aikawa M.,Miyazaki K., Yamaguchi K. Cloning of hexamethylene-bis-acetamideinducible transcript,HEXIM1, in human vascular smooth muscle cells. // Biomed. Res. 1999. V. 20.P. 273-279.98.Markert A., Grimm M., Martinez J., Wiesner J., Meyerhans A., Meyuhas O.,Sickmann A., Fischer U. The La-related protein LARP7 is a component of the 7SKribonucleoprotein and affects transcription of cellular and viral polymerase II genes. //EMBO Rep.
![](https://s.studizba.com/z.php?f=/templates/si/i/noavatar.png&w=100&h=100&t=1"){kind=avatar}
