Диссертация (1140107), страница 24
Текст из файла (страница 24)
73. – №. 5. – С. 1576-1585.doi:10.1128/AEM.01996-06.178) Lozupone C., Knight R. UniFrac: a new phylogenetic method for comparingmicrobial communities //Applied and environmental microbiology. – 2005. – Т. 71. –№. 12. – С. 8228-8235. doi:10.1128/AEM.71.12.8228-8235.2005179) MacFabe D. F. Enteric short-chain fatty acids: microbial messengers ofmetabolism, mitochondria, and mind: implications in autism spectrum disorders//Microbial ecology in health and disease. – 2015. – Т. 26.
– №. 1. – С. 28177.doi:10.3402/mehd.v26.28177.180) Macfarlane G. T., Macfarlane S. Bacteria, colonic fermentation, andgastrointestinal health //Journal of AOAC International. – 2012. – Т. 95. – №. 1. – С.50-60. doi:10.5740/jaoacint.SGE_Macfarlane181) Magliacane S. et al.
Causal transfer learning //arXiv preprint arXiv:1707.06422. –2017.182) Markesbery W. R. et al. Lewy body pathology in normal elderly subjects //Journalof Neuropathology & Experimental Neurology. – 2009. – Т. 68. – №. 7. – С. 816-822.doi:10.1097/NEN.0b013e3181ac10a7.183) Maslowski K. M. et al. Regulation of inflammatory responses by gut microbiotaand chemoattractant receptor GPR43 //Nature. – 2009. – Т. 461. – №. 7268.
– С. 1282.doi:10.1038/nature08530.184) Maslowski K. M., Mackay C. R. Diet, gut microbiota and immune responses//Nature immunology. – 2010. – Т. 12. – №. 1. – С. 5. doi: 10.1038/ni0111-5.145185) Mason M. R. et al. Deep sequencing identifies ethnicity-specific bacterialsignatures in the oral microbiome //PloS one. – 2013. – Т. 8. – №. 10. – С. E77287. doi:10.1371/journal.pone.0077287186) Mbakwa C. A. et al. Gut colonization with Methanobrevibacter smithii isassociated with childhood weight development //Obesity.
– 2015. – Т. 23. – №. 12. – С.2508-2516. doi: 10.1002/oby.21266187) McDonald D. et al. The Biological Observation Matrix (BIOM) format or: how Ilearned to stop worrying and love the ome-ome //GigaScience. – 2012. – Т. 1. – №. 1. –С. 7. doi:10.1186/2047-217X-1-7.188) Meric M. et al. Water-borne Sphingomonas paucimobilis epidemic in an intensivecare unit //Journal of Infection. – 2009. – Т.
58. – №. 3. – С. 253-255. doi:10.1016/j.jinf.2009.01.007.189) Meuric V. et al. Signature of microbial dysbiosis in periodontitis //Applied andenvironmental microbiology. – 2017. – Т. 83. – №. 14. – С. E00462-17. doi:10.1128/AEM.00462-17.190) Mika F., Hengge R. Small regulatory RNAs in the control of motility and biofilmformation in E. coli and Salmonella //International journal of molecular sciences. –2013.
– Т. 14. – №. 3. – С. 4560-4579. doi:10.3390/ijms14034560191) Minguez-Castellanos A. et al. Do α-synuclein aggregates in autonomic plexusespredate Lewy body disorders? A cohort study //Neurology. – 2007. – Т. 68. – №. 23. –С. 2012-2018. doi: 10.1212/01.wnl.0000264429.59379.d9192) Minter M.
R. et al. Antibiotic-induced perturbations in gut microbial diversityinfluences neuro-inflammation and amyloidosis in a murine model of Alzheimer’sdisease //Scientific reports. – 2016. – Т. 6. – С. 30028. doi: 10.1038/srep30028.193) Miyake S. et al. Dysbiosis in the gut microbiota of patients with multiple sclerosis,with a striking depletion of species belonging to clostridia XIVa and IV clusters //PLoSOne.
– 2015. – Т. 10. – №. 9. – С. e0137429.194) Moeller A. H. et al. Chimpanzees and humans harbour compositionally similar gutenterotypes//Naturecommunications.doi:10.1038/ncomms2159.–2012.–Т.3.–С.1179.146195) Moitinho-Silva L. et al. Integrated metabolism in sponge–microbe symbiosisrevealed by genome-centered metatranscriptomics //The ISME journal. – 2017. – Т. 11.– №. 7. – С. 1651.
doi: 10.1038/ismej.2017.25.196) Montiel-Castro A. J. et al. The microbiota-gut-brain axis: neurobehavioralcorrelates, health and sociality //Frontiers in integrative neuroscience. – 2013. – Т. 7. –С. 70. doi: 10.3389/fnint.2013.00070197) Mouchiroud L. et al. Transcriptional coregulators: fine-tuning metabolism //Cellmetabolism.
– 2014. – Т. 20. – №. 1. – С. 26-40. doi:10.1016/j.cmet.2014.03.027.198) Moya A., Ferrer M. Functional redundancy-induced stability of gut microbiotasubjected to disturbance //Trends in microbiology. – 2016. – Т. 24. – №. 5. – С. 402413. doi: 10.1016/j.tim.2016.02.002.199) Müller D. B. et al. The plant microbiota: systems-level insights and perspectives//annual review of genetics. – 2016. – Т. 50.
– С. 211-234. doi:10.1146/annurev-genet120215-034952200) Murphy E. C., Frick I. M. Gram-positive anaerobic cocci–commensals andopportunistic pathogens //FEMS microbiology reviews. – 2013. – Т. 37. – №. 4. – С.520-553. doi: 10.1111/1574-6976.12005.201) Murray A. E. et al. Microbiome composition and diversity of the ice-dwelling seaanemone, Edwardsiella andrillae //Integrative and comparative biology. – 2016. – Т.
56.– №. 4. – С. 542-555. doi: 10.1093/icb/icw095.202) Natale G. et al. Parkinson’s disease and the gut: a well known clinical associationin need of an effective cure and explanation //Neurogastroenterology & Motility. –2008. – Т. 20. – №. 7. – С. 741-749. doi:10.1111/j.1365-2982.2008.01162.x203) Natividad J. M. M., Verdu E.
F. Modulation of intestinal barrier by intestinalmicrobiota: pathological and therapeutic implications //Pharmacological research. –2013. – Т. 69. – №. 1. – С. 42-51. doi:10.1016/j.phrs.2012.10.007204) Ng W. L., Bassler B. L. Bacterial quorum-sensing network architectures //Annualreview of genetics. – 2009. – Т. 43. – С. 197-222. doi: 10.1146/annurev-genet-102108134304205) Nishiyama K.
et al. Bifidobacterium bifidum Extracellular Sialidase Enhances147Adhesion to the Mucosal Surface and Supports Carbohydrate Assimilation //mBio. –2017. – Т. 8. – №. 5. – С. E00928-17. doi:10.1128/mBio.00928-17206) Noyce A. J. et al. Meta‐analysis of early nonmotor features and risk factors forParkinson disease //Annals of neurology. – 2012. – Т. 72.
– №. 6. – С. 893-901.doi:10.1002/ana.23687207) O'Herrin S. M., Kenealy W. R. Glucose and carbon dioxide metabolism bySuccinivibrio dextrinosolvens //Applied and environmental microbiology. – 1993. – Т.59. – №. 3. – С. 748-755.208) Park S. C. et al. Functional characterization of alpha-synuclein protein withantimicrobial activity //Biochemical and biophysical research communications.
– 2016.– Т. 478. – №. 2. – С. 924-928. doi: 10.1016/j.bbrc.2016.08.052209) Parkinson J.An essay on the shaking palsy. 1817. Переиздано в Parkinson J. Anessay on the shaking palsy //The Journal of neuropsychiatry and clinical neurosciences.– 2002. – Т. 14.
– №. 2. – С. 223-236.210) Pasolli E. et al. Machine learning meta-analysis of large metagenomic datasets:tools and biological insights //PLoS computational biology. – 2016. – Т. 12. – №. 7. –С. e1004977. doi:10.1371/journal.pcbi.1004977.211) Patrascu O. et al. A fibrolytic potential in the human ileum mucosal microbiotarevealed by functional metagenomic //Scientific Reports. – 2017. – Т. 7.
– С. 40248.doi:10.1038/srep40248.212) Paulson J. N. et al. Differential abundance analysis for microbial marker-genesurveys //Nature methods. – 2013. – Т. 10. – №. 12. – С. 1200. doi:10.1038/nmeth.2658213) Pearson K. LIII. On lines and planes of closest fit to systems of points in space//The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science.
–1901. – Т. 2. – №. 11. – С. 559-572. doi:10.1080/14786440109462720.214) Peng L. et al. Butyrate enhances the intestinal barrier by facilitating tight junctionassembly via activation of AMP-activated protein kinase in Caco-2 cell monolayers//The Journal of nutrition. – 2009. – Т. 139.
– №. 9. – С. 1619-1625. doi:10.3945/jn.109.104638148215) Pereira P. et al. Bile microbiota in primary sclerosing cholangitis: Impact ondisease progression and development of biliary dysplasia //PloS one. – 2017. – Т. 12. –№. 8. – С. e0182924. doi: 10.1371/journal.pone.0182924216) Pérez T. et al. Host–microbiota interactions within the fish intestinal ecosystem//Mucosal immunology.
– 2010. – Т. 3. – №. 4. – С. 355.217) Perez-Muñoz M. E. et al. A critical assessment of the “sterile womb” and “in uterocolonization” hypotheses: implications for research on the pioneer infant microbiome//Microbiome. – 2017. – Т. 5.
– №. 1. – С. 48. doi:10.1186/s40168-017-0268-4218) Peterson D. A. et al. Metagenomic approaches for defining the pathogenesis ofinflammatory bowel diseases //Cell host & microbe. – 2008. – Т. 3. – №. 6. – С. 417427. doi:10.1016/j.chom.2008.05.001.219) Pimentel M. M. G. et al. Parkinson disease: α-synuclein mutational screening andnew clinical insight into the p. E46K mutation //Parkinsonism & related disorders.
–2015. – Т. 21. – №. 6. – С. 586-589. doi: 10.1016/j.parkreldis.2015.03.011220) Quast C. et al. The SILVA ribosomal RNA gene database project: improved dataprocessing and web-based tools //Nucleic acids research. – 2012. – Т. 41. – №. D1. – С.D590-D596. doi:10.1093/nar/gks1219221) Qureshi I.