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Hess B. et al. GROMACS 4: algorithms for highly efficient, load-balanced, and scalablemolecular simulation //Journal of chemical theory and computation. – 2008. – Т. 4. – №. 3. –С. 435-447.2. Drew H. R., Samson S., Dickerson R. E. Structure of a B-DNA dodecamer at 16 K//Proceedings of the National Academy of Sciences.
– 1982. – Т. 79. – №. 13. – С. 40404044.163. Pérez A. et al. Refinement of the AMBER force field for nucleic acids: improving thedescription of α/γ conformers //Biophysical journal. – 2007. – Т. 92. – №. 11. – С. 3817-3829.4. Dickson C. J. et al. Lipid14: the amber lipid force field //Journal of chemical theory andcomputation. – 2014. – Т. 10. – №. 2. – С. 865-879.Все результаты представлены в публикациях в журналах, индексируемых вмеждународных библиографических базах данных Web of Science и Scopus.Публикации1.
Antipina A. Y., Gurtovenko A. A. Molecular Mechanism of Calcium-Induced Adsorption ofDNA on Zwitterionic Phospholipid Membranes //The Journal of Physical Chemistry B. –2015. – Т. 119. – №. 22. – С. 6638-6645.2. Antipina A. Y., Gurtovenko A. A. Molecular-level insight into the interactions of DNA withphospholipid bilayers: barriers and triggers //RSC Advances.
– 2016. – Т. 6. – №. 43. – С.36425-36432.Тезисы докладов1. Antipina A.Yu., Gurtovenko A.A. Interactions of DNA with biomimetic systems: insight frommolecular dynamics simulations //8th international symposium “Molecular order and mobilityin polymer systems”. St. Petersburg. Book of abstracts. – 2014. – p.0762.
Antipina A.Yu., Gurtovenko A.A. Interactions of DNA with biomembranes in the presence ofcalcium ions: insight from molecular dynamics simulations //IX International conference ofyoung scientists on chemistry „Mendeleev-2015”. St.Petersburg. Book of abstracts. – 2015. –p. 336.3. Antipina A. Yu., Gurtovenko A.A. Electrostatic Nano-Stitches for DNA: AtomisticSimulations of Ca-Mediated Adsorption of DNA on Phospholipid Membranes //11-thInternational Conference on Diffusion in Solids and Liquids-DSL 2015.
Munich. Book ofabstracts. – 2015.4. Gurtovenko A.A., Antipina A.Yu. Calcium-triggered adsorption of DNA on zwitterionicphospholipidmembranes:InsightfromMDsimulations//3rdEuropeanJointTheoretical/Experimental Meeting on Membranes. Stockholm. Book of abstracts. – 2015.5. Antipina A.Yu., Gurtovenko A.A. Computer modeling of DNA adsorption on the surface ofphospholipid membranes //11th International Saint-Petersburg Conference of Young Scientists“Modern problems of polymer science.” St.
Petersburg. Book of abstracts – 2015. – p.87.6.Antipina A. Yu., Gurtovenko A.A. Computer simulation study of structural and dynamicproperties of DNA-lipid complexes //International Student Conference “Science andProgress”. St.Petersburg-Peterhof. Book of abstracts. – 2015. – p. 135..
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