Диссертация (1144259), страница 27
Текст из файла (страница 27)
7, № 6. -- C. 1042-51.[171] Simons K., Ikonen E. Functional rafts in cell membranes // Nature. -- 1997. -- Jun5. -- T. 387, № 6633. -- C. 569-72.[172] Brown D. A. Lipid rafts, detergent-resistant membranes, and raft targeting signals// Physiology (Bethesda). -- 2006. -- Dec. -- T. 21. -- C. 430-9.[173] Eggeling C., Ringemann C., Medda R., Schwarzmann G., Sandhoff K., PolyakovaS., Belov V. N., Hein B., von Middendorff C., Schonle A., Hell S. W. Directobservation of the nanoscale dynamics of membrane lipids in a living cell // Nature.
-2009. -- Feb 26. -- T. 457, № 7233. -- C. 1159-62.[174] Hamada T., Kishimoto Y., Nagasaki T., Takagi M. Lateral phase separation intense membranes // Soft Matter. -- 2011. -- T. 7, № 19. -- C. 9061-9068.[175] Klemm R. W., Ejsing C. S., Surma M. A., Kaiser H. J., Gerl M. J., Sampaio J. L.,de Robillard Q., Ferguson C., Proszynski T. J., Shevchenko A., Simons K.
Segregationof sphingolipids and sterols during formation of secretory vesicles at the trans-Golginetwork // J Cell Biol. -- 2009. -- May 18. -- T. 185, № 4. -- C. 601-12.[176] Surma M. A., Klose C., Simons K. Lipid-dependent protein sorting at the transGolgi network // Biochim Biophys Acta. -- 2012. -- Aug. -- T. 1821, № 8. -- C.
105967.[177] Garofalo T., Matarrese P., Manganelli V., Marconi M., Tinari A., Gambardella L.,Faggioni A., Misasi R., Sorice M., Malorni W. Evidence for the involvement of lipidrafts localized at the ER-mitochondria associated membranes in autophagosomeformation // Autophagy. -- 2016. -- Jun 2. -- T. 12, № 6. -- C. 917-35.[178] van Vliet A. R., Verfaillie T., Agostinis P. New functions of mitochondriaassociated membranes in cellular signaling // Biochim Biophys Acta. -- 2014.
-- Oct. -T. 1843, № 10. -- C. 2253-62.[179] Annunziata I., Sano R., d'Azzo A. Mitochondria-associated ER membranes(MAMs) and lysosomal storage diseases // Cell Death Dis. -- 2018. -- Feb 28. -- T. 9, №3. -- C. 328.[180] Vance J. E. MAM (mitochondria-associated membranes) in mammalian cells:lipids and beyond // Biochim Biophys Acta. -- 2014.
-- Apr 4. -- T. 1841, № 4. -- C.595-609.- 140 -[181] Krols M., Bultynck G., Janssens S. ER-Mitochondria contact sites: A newregulator of cellular calcium flux comes into play // J Cell Biol. -- 2016. -- Aug 15. -- T.214, № 4. -- C. 367-70.[182] Krols M., van Isterdael G., Asselbergh B., Kremer A., Lippens S., TimmermanV., Janssens S. Mitochondria-associated membranes as hubs for neurodegeneration //Acta Neuropathol. -- 2016. -- Apr. -- T. 131, № 4. -- C.
505-23.[183] Schon E. A., Area-Gomez E. Mitochondria-associated ER membranes inAlzheimer disease // Mol Cell Neurosci. -- 2013. -- Jul. -- T. 55. -- C. 26-36.[184] Waldner C., Roose M., Ryffel G. U. Red fluorescent Xenopus laevis: a new toolfor grafting analysis // BMC Dev Biol. -- 2009.
-- Jun 23. -- T. 9. -- C. 37.[185] Joesch M., Mankus D., Yamagata M., Shahbazi A., Schalek R., Suissa-Peleg A.,Meister M., Lichtman J. W., Scheirer W. J., Sanes J. R. Reconstruction of geneticallyidentified neurons imaged by serial-section electron microscopy // Elife. -- 2016. -- Jul7. -- T. 5.[186] Lam S. S., Martell J.
D., Kamer K. J., Deerinck T. J., Ellisman M. H., Mootha V.K., Ting A. Y. Directed evolution of APEX2 for electron microscopy and proximitylabeling // Nat Methods. -- 2015. -- Jan. -- T. 12, № 1. -- C. 51-4.[187] Otwinowski Z., Minor W. Processing of X-ray diffraction data collected inoscillation mode // Methods Enzymol. -- 1997. -- T. 276.
-- C. 307-26.[188] McCoy A. J., Grosse-Kunstleve R. W., Adams P. D., Winn M. D., Storoni L. C.,Read R. J. Phaser crystallographic software // J Appl Crystallogr. -- 2007. -- Aug 1. -T. 40, № Pt 4. -- C. 658-674.[189] Vagin A., Teplyakov A. Molecular replacement with MOLREP // ActaCrystallogr D Biol Crystallogr. -- 2010. -- Jan. -- T. 66, № Pt 1. -- C. 22-5.[190] Bhat T. N. Calculation of an Omit Map // Journal of Applied Crystallography.
-1988. -- Jun 1. -- T. 21. -- C. 279-281.[191] Emsley P., Lohkamp B., Scott W. G., Cowtan K. Features and development ofCoot // Acta Crystallogr D Biol Crystallogr. -- 2010. -- Apr. -- T. 66, № Pt 4. -- C. 486501.[192] Brunger A. T. Free R value: a novel statistical quantity for assessing the accuracyof crystal structures // Nature. -- 1992. -- Jan 30. -- T. 355, № 6359. -- C.
472-5.[193] Painter J., Merritt E. A. Optimal description of a protein structure in terms ofmultiple groups undergoing TLS motion // Acta Crystallogr D Biol Crystallogr. -- 2006.-- Apr. -- T. 62, № Pt 4. -- C. 439-50.[194] Dodson E. J., Murshudov G. N., Vagin A. A. Description of Program UsingMaximum Likelihood Residual for Macromolecular Refinement, Illustrated by SeveralExamples. // Acta Crystallographica a-Foundation and Advances. -- 1996.
-- T. 52. -- C.C85-C85.[195] Murshudov G. N., Skubak P., Lebedev A. A., Pannu N. S., Steiner R. A., NichollsR. A., Winn M. D., Long F., Vagin A. A. REFMAC5 for the refinement ofmacromolecular crystal structures // Acta Crystallogr D Biol Crystallogr. -- 2011. -Apr. -- T. 67, № Pt 4. -- C. 355-67.[196] Chen V. B., Arendall W. B., Headd J. J., Keedy D. A., Immormino R. M., KapralG. J., Murray L. W., Richardson J. S., Richardson D. C. MolProbity: all-atom structure- 141 -validation for macromolecular crystallography // Acta Crystallographica Section DBiological Crystallography. -- 2010. -- Jan. -- T.
66. -- C. 12-21.[197] Afonine P. V., Grosse-Kunstleve R. W., Echols N., Headd J. J., Moriarty N. W.,Mustyakimov M., Terwilliger T. C., Urzhumtsev A., Zwart P. H., Adams P. D. Towardsautomated crystallographic structure refinement with phenix.refine // ActaCrystallographica Section D-Biological Crystallography. -- 2012. -- Apr. -- T.
68. -- C.352-367.[198] Krissinel E., Henrick K. Detection of protein assemblies in crystals //Computational Life Sciences, Proceedings. -- 2005. -- T. 3695. -- C. 163-174.[199] Winn M. D., Ballard C. C., Cowtan K. D., Dodson E. J., Emsley P., Evans P. R.,Keegan R.
M., Krissinel E. B., Leslie A. G., McCoy A., McNicholas S. J., MurshudovG. N., Pannu N. S., Potterton E. A., Powell H. R., Read R. J., Vagin A., Wilson K. S.Overview of the CCP4 suite and current developments // Acta Crystallogr D BiolCrystallogr. -- 2011. -- Apr. -- T. 67, № Pt 4.
-- C. 235-42.[200] Mizuguchi K., Deane C. M., Blundell T. L., Johnson M. S., Overington J. P. JOY:protein sequence-structure representation and analysis // Bioinformatics. -- 1998. -- T.14, № 7. -- C. 617-23.[201] Touw W. G., Baakman C., Black J., te Beek T. A., Krieger E., Joosten R. P.,Vriend G.
A series of PDB-related databanks for everyday needs // Nucleic Acids Res. - 2015. -- Jan. -- T. 43, № Database issue. -- C. D364-8.[202] Schrodinger, LLC. The PyMOL Molecular Graphics System, Version 1.8, 2015.[203] Adams P. D., Afonine P. V., Bunkoczi G., Chen V. B., Davis I. W., Echols N.,Headd J. J., Hung L. W., Kapral G. J., Grosse-Kunstleve R. W., McCoy A. J., MoriartyN. W., Oeffner R., Read R.
J., Richardson D. C., Richardson J. S., Terwilliger T. C.,Zwart P. H. PHENIX: a comprehensive Python-based system for macromolecularstructure solution // Acta Crystallogr D Biol Crystallogr. -- 2010. -- Feb. -- T. 66, № Pt2. -- C. 213-21.[204] Pchitskaya E., Kraskovskaya N., Chernyuk D., Popugaeva E., Zhang H., VlasovaO., Bezprozvanny I.
Stim2-Eb3 Association and Morphology of Dendritic Spines inHippocampal Neurons // Sci Rep. -- 2017. -- Dec 15. -- T. 7, № 1. -- C. 17625.[205] Popugaeva E., Pchitskaya E., Speshilova A., Alexandrov S., Zhang H., VlasovaO., Bezprozvanny I. STIM2 protects hippocampal mushroom spines from amyloidsynaptotoxicity // Mol Neurodegener. -- 2015. -- Aug 15. -- T.
10. -- C. 37.[206] Wieckowski M. R., Giorgi C., Lebiedzinska M., Duszynski J., Pinton P. Isolationof mitochondria-associated membranes and mitochondria from animal tissues and cells// Nat Protoc. -- 2009. -- T. 4, № 11. -- C. 1582-90.[207] Rigaud J. L., Levy D. Reconstitution of membrane proteins into liposomes //Methods Enzymol. -- 2003.
-- T. 372. -- C. 65-86.[208] Levy D., Gulik A., Bluzat A., Rigaud J. L. Reconstitution of the sarcoplasmicreticulum Ca(2+)-ATPase: mechanisms of membrane protein insertion into liposomesduring reconstitution procedures involving the use of detergents // Biochim BiophysActa. -- 1992. -- Jun 30.
-- T. 1107, № 2. -- C. 283-98.[209] Andres A. M., Lao O., Soldevila M., Calafell F., Bertranpetit J. Dynamics ofCAG repeat loci revealed by the analysis of their variability // Hum Mutat. -- 2003. -Jan. -- T. 21, № 1. -- C. 61-70.- 142 -[210] Butland S. L., Devon R. S., Huang Y., Mead C. L., Meynert A. M., Neal S.
J., LeeS. S., Wilkinson A., Yang G. S., Yuen M. M., Hayden M. R., Holt R. A., Leavitt B. R.,Ouellette B. F. CAG-encoded polyglutamine length polymorphism in the humangenome // BMC Genomics. -- 2007. -- May 22. -- T. 8. -- C. 126.[211] Juvonen V., Hietala M., Kairisto V., Savontaus M. L. The occurrence of dominantspinocerebellar ataxias among 251 Finnish ataxia patients and the role of predisposinglarge normal alleles in a genetically isolated population // Acta Neurol Scand.
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